Download GCN (csv format) Download GCN (xlsx format)

Download WGCN metadata



Download plot

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Look at the top 420 most co-expressed genes in fruit/flower tissues for your gene of interest. A total of 35 SRA studies (807 runs) from fruit/flower samples were included (metadata available for download in the 'Download AggWGCN metadata' button). The data presented corresponds to the processed SRA runs in Orduña et al. (2022). Direct regulation of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine. Plant J. doi:10.1111/tpj.15686

Abbreviations:

  • AggWGCN: Aggregated Whole Genome Co-expression Network
  • GCN: Gene Centered Network




Download Cytoscape table

Excel input example format 1

Excel input example format 2

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Visualize all the co-expression connections amongst your input gene list in an interactive 3D subnetwork. Genes with no co-expression interactions reported within the list will still appear as nodes but with no edges. A total of 35 SRA studies (807 runs) from fruit/flower samples were included. The data presented corresponds to the processed SRA runs in Orduña et al. (2022). Direct regulation of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine. Plant J. doi:10.1111/tpj.15686